- Research Article
- Open Access
Chemical composition, antioxidant activity and antibacterial mechanism of action from Marsilea minuta leaf hexane: methanol extract
© The Author(s) 2018
- Received: 14 July 2018
- Accepted: 10 October 2018
- Published: 20 October 2018
In the present study, hexane: methanol (50:50) leaf extract of Marisela minuta has been evaluated for its chemical composition, antioxidant effect and the antimicrobial mechanism of action against food borne pathogenic bacteria.
The phytochemical evaluation of extract by GC/MS revealed the major abundance of benzoic acid-4-ethoxyethyl ester (43.39%) and farnesol acetate (18.42%). The extract exhibited potential antioxidant and free radical scavenging properties with promising antibacterial activities against the test pathogens with Pseudomonas aeruginosa being the most susceptible with maximum inhibition zone (17 mm) and IC50 value of 125 µg, respectively. The significant (p < 0.05) increase in intracellular super oxide dismutase (SOD), protein leakage, extracellular alkaline phosphatase and lactate dehydrogenase in treated test pathogens suggested an increase in oxidative stress reveling the mechanism of action of phytochemicals. Scanning electron microscopy analysis of treated pathogens also showed swollen and distorted cells. The bioactive molecules in the extract were efficiently docked with virulent enzymes and farnesol acetate showed best energy value of − 5.19 and − 4.27 kcal/mol towards Topoisomerase IV and SHV-2 respectively. Benzoic acid-4-ethoxyethyl ester showed best binding against TEM-72 with low binding energy value of − 4.35 kcal/mol.
Due to its antioxidant and antibacterial properties, the leaf extract of M. minuta may act as promising natural additives to prevent food spoilage bacteria.
- Marsilea minuta
- Leaf extract
- Natural preservative
- Docking analysis
The rise in prevalence of multi-drug resistant bacteria has been accredited to undiscriminating use of broad-spectrum antibiotics [1–3]. Nowadays increase of emerging antibiotic resistant bacteria has become a worldwide concern. These drug resistant organisms also can contribute to the risk of food contamination. There have been reports for some drug resistant bacteria like Pseudomonas aeruginosa, Staphylococcus aureus and Enterococcus faecalis as potent food contaminants [4, 5]. The addition of preservatives has been an effective method to control microbial contamination and authorised synthetic preservatives are still being used to prevent microbial spoilage of processed food. Recently, there is an increasing customer awareness regarding to chemical preservatives in processed food. Considering the demand for natural products with high safety and biological properties, plant compounds has attracted the attention of researchers globally.
Plant secondary metabolites like flavonoids and other phenolic compounds are widely occurring phytochemicals reported to possess antioxidant and antimicrobial properties [6–8]. Many research studies reported plant secondary metabolites exhibit good antioxidant properties [9, 10] and the metabolites from plant origin have a wide spectrum of antimicrobial action against food-borne pathogens and spoilage bacteria . Therefore, the pharmaceutical industries are still in the search of active drug molecules from the unexploited medicinal plants, which exhibit good biological effects (antioxidant and preservative). In plant extracts, massive amount of constituents are present but not all of those are related to pharmaceutical applications. By using chromatography techniques, these phytochemical constituents can be identified, sub-fractionated and tested for their biological properties and many studies reported the chemical composition from plant extracts using GC–MS analysis [12, 13].
In silico studies are preliminary approach to screening novel drug candidates and an emerging strategy to reduce many complexities of drug discovery process and this method has played important role in the rational drug design to identify the biological or phytocompounds potential against antimicrobial resistant proteins . In the present study, we selected Marsilea minuta Linn (Marsileaceae) leaves material for exploring its biological potential. M. minuta commonly found in the banks of ponds and canals and as a weed in the wet rice fields and distributed throughout India. It has a great traditional medicinal value possessing anti-infertility , anti-depressant , hypocholesterolemic  and hepatoprotective activities . Earlier studies investigated the antibacterial activity of gold nanoparticles synthesized from the M. minuta leaf extract against Escherichia coli and Staphylococcus aureus  and antibacterial activity against various pathogens have also been reported . However, there are no reports on the complete phytochemical composition and the mode of action of extracts from M. minuta against food borne pathogens. Therefore, the objective of this work is to evaluate the chemical composition, antioxidant activity, antimicrobial activity, and the mode of action against food borne pathogens of M. minuta leaf extract.
Chemical composition of the M. minuta leaves extract
GC–MS analysis of Marsilea minuta leaves extract
Class of compound
Phenol, 2,4-bis (1,1-dimethylethyl)
Benzoic acid, 4-ethoxy-, ethyl ester
Aromatic acid ester
Phthalic acid, isobutyl undecyl ester
1,2-Benzenedicarboxylic acid, butyl-2-methylpropylester
Unsaturated fatty acid
Unsaturated fatty acid
Ferric reducing antioxidant power assay
IC50 value of FRAP and DPPH radical scavenging activity
Scavenging activity of DPPH radicals
This method depends on the reduction of purple DPPH radicals to a yellow colored diphenyl picryl hydrazine. The reduction of color of DPPH solution indicates an increase of the DPPH radical scavenging activity . The percentage of DPPH scavenging in the presence M. minuta leaves extracts at different concentrations were shown in Fig. 1b. The result showed a significant dose-dependent inhibition of DPPH activity and the values were found to be significant (p < 0.05). The IC50 concentrations for the standard (vitamin C) and M. minuta extracts were found to be 5.77 and 8.94 µg/ml, respectively. The extract exhibited concentration dependent activity and the presence of certain phytochemicals may result in the free radical scavenging potential. Moreover, our results are in agreement with previous findings demonstrating DPPH scavenging effect of methanolic extract of M. quadrifolia .
Antibacterial activity (zone of inhibition, mm) of M. minuta leaves extract
16 ± 0.42
26 ± 0.72
16 ± 0.38
24 ± 0.45
17 ± 0.27
25 ± 0.33
12 ± 0.34
26 ± 0.76
Minimum inhibitory concentration of M. minuta leaves extract
ALP quantification assay
In bacteria, alkaline phosphatase (ALP) is usually located in the periplasmic space to generate free phosphate groups for uptake and use. More amount of alkaline phosphatase is usually produced during phosphate starvation and sporulation. In the present study, we observed significant increase (p < 0.05) in the ALP level in the bacteria treated with M. minuta leaves extract (Fig. 2b). The increase may be because of stress imposed on the bacteria by the extract, and in order to overcome the starvation, the bacteria produces more amount of ALP. Previous studies revealed that the ALP levels were increased in Clostridium perfringens and Brachyspira hyodysenteriae upon treatment with Quinoxaline 1,4-di-N-oxide derivatives compared to the non-treated groups . Therefore, the observed significant increase in the ALP activities in the bacteria treated with M. minuta extract suggests an increase in the activities of the existing enzymes by the secondary metabolites.
LDH quantification assay
The effects of M. minuta extract on LDH activities of S. aureus and other bacteria were shown in Fig. 2c. The LDH activity in the treated bacterial group were high when compared to the untreated one. The values were significant (p < 0.05) and showed a variance of 120–175 units/l. This indicate that M. minuta extract does interact with the bacterial cell surface. M. minuta-bacteria interaction mediated by electrostatic forces. After attachment, alternation in membrane permeability causes the leakage of cytosolic enzyme (glucose and LDH), which finally causes cell death .
Intra cellular protein leakage
The M. minuta extract was observed to induce protein leakage in all the test organisms (Fig. 2d). Both of the Gram (−) and Gram (+) bacteria showed a similar trend of protein leakage when treated with the M. minuta extract. Among all bacteria, P. aeruginosa had the highest damaging effect causing leakage compared to untreated bacteria (p < 0.05). This is in agreement with the previous report by Henie et al.  indicating measuring protein leakage level could be used as an indicator of membrane damage.
Scanning electron microscope observation
Docking study of M. minuta ligands with target proteins
The docking scores of the ligands with the target protein
Binding energy (kcal/mol)
TEM-72 (PDB ID: 3P98)
Benzoic acid-4-ethoxy-ethyl ester
SHV-2 (PDB ID: 1N9B)
Topoisomerase IV (PDB ID: 3LPS)
Chemical reagents and solvents
Folin-Ciocalteu reagent, 2,2-diphenyl-1-picrylhydrazyl (DPPH), Sodium carbonate, Aluminum chloride, O-phenanthroline, EDTA, Nitro Blue Tetrazolium dye (NBT), NaOH, p-nitrophenol, CaCl2,Trichloroacetic acid (TCA) and n-hexane, methanol were purchased from Sigma Chemical Co., Ltd (St. Louis, MO,USA). All other chemicals and solvents used were of analytical grade (AR) and purchased from Himedia, India.
Bacillus subtilis (ATCC 9372), Enterococcus faecalis (ATCC 29212), Klebsiella pneumoniae (ATCC 9621), Pseudomonas aeruginosa (ATCC 27853) and Staphylococcus aureus (ATCC 25923) were obtained from the Pondicherry center for biological sciences (PCBS), Pondicherry, India. All bacterial cultures were maintained in Mueller–Hinton Agar (MHA, Himedia, India) slants and stored at − 20 °C.
Plant collection and extract preparation
Fresh leaves of M. minuta were collected from the region of Gopalapuram, Cuddalore district, Tamil Nadu, India. A botanist authenticated the leaves specimen and the voucher specimen deposited in the laboratory. The leaves of M. minuta were shade dried (10 days) and powered by using grinder. For extraction, we have first extracted the sample-using methanol. Further, the methanol solution re-extracted by liquid–liquid extraction using hexane: methanol (50:50 v/v) ratio. The later liquid–liquid extraction was conducted to remove the fat content in the methanol extract . The extract yield (pale brownish in color) was 17.84% (v/v). The extracts were dehydrated over anhydrous sodium sulfate and stored at 4 °C in air-tight glass vials until use.
The M. minuta hexane: methanol extract was analysed by a Thermo Trace 1310 (Gas chromatograph) system, fitted with a TG-5MS (Mass spectroscopy) column (30 × 0.25 mm (5%-phenyl)–methylpolysiloxane capillary column, coating thickness × 0.25 µm), 220 °C temperature injector and 250 °C temperature transfer line. The oven temperature was held at 50 °C for 5 min, and then programmed to 250 °C at rate of 4 °C/min. The ionizing energy was 70 eV. The amount of sample injected was 1 µl (split ratio 1:10). Identification of unknown components in M. minuta extracts were determined by comparing the retention times of chromatographic peaks using Quadra pole detector with the National Institute Standard and Technology (NIST MS search Program V.2.0 g) library to relative retention indices. Quantitative determinations were made by relating respective peak areas to total ion chromatogram areas from the GC–MS .
Ferric reducing antioxidant power (FRAP) assay
The FRAP activity was determined by colorimetric method . The reaction mixture containing 1 ml of 0.05% O-Phenanthroline in methanol, 2 ml ferric chloride (200 μM) and 2 ml of various concentrations (10 to 50 μg) of M. minuta extracts, incubated at room temperature for 10 min and the absorbance of the sample was measured at 510 nm. Moreover, the IC50 value was calculated. The experiments were performed in triplicate.
DPPH free radical scavenging assay
Superoxide dismutase (SOD) quantification
SOD activity was done based on the reduction of superoxide-nitroblue tetrazolium complex according to a previously reported protocol . The assay mixture contained 25 µl cell supernatant (microbial cell) obtained by lysing the extract treated cells by Triton X-100, with 0.05 ml of l-methionine (200 mM), and 0.05 ml of nitro blue tetrazolium (1.5 mM NBT) solution. The enzyme activity was measured by measuring the reduction of NBT with xanthine oxidase as a hydrogen peroxide generating agent. The reaction mixture was illuminated for 30 min and the absorbance at 560 nm was measured against the control and test samples.
Alkaline phosphatase (ALP) quantification
Bacteria were cultured in MHB treated with 1 mg/ml of M. minuta leaf extract. After 14 h of incubation, cell free supernatants were collected for ALP assay. The assay was performed using ALP assay kit (Linear Chemicals, Montgat, Barcelona, Spain) by following the procedure as reported earlier . To measure the ALP activity, extract treated samples were compared with control (cells without treatment) and the results were expressed in units/liter.
Assessment of antibacterial activity
The antibacterial activity of M. minuta leaves extract was performed by well diffusion method. Respective bacterial cultures were swabbed onto sterile petri plates containing Muller Hinton agar using sterile cotton swab. Then wells of 6 mm in diameter were made and 30 µl (30 μg) of extracts and 30 µl of streptomycin (30 μg/ml; used as positive control) were added to each well. Further, the plates were incubated at 37 °C for 14 h. After incubation, the antibacterial activity was measured in terms of zone of inhibition (mm). The experiments were performed in triplicate.
Minimum inhibitory concentration (MIC)
A twofold serial dilution of M. minuta extracts in Mueller–Hinton broth had been prepared in 96-well micro titre plate . A standardized inoculum for each bacterial strain (106 CFU/ml) was prepared in each well. Streptomycin was used as a control. The plate was kept at 37 °C and incubated for 14 h. MIC was calculated as the lowest concentration of the extracts inhibiting the visual growth of the test cultures on the agar plate.
Lactate dehydrogenase (LDH) quantification
The presence of the cytosolic enzyme (LDH) in the cell culture medium is the indicative of cell membrane damage. The LDH activity was determined by measuring the reduction of NAD+ to NADH and H+ during the oxidation of lactate to pyruvate. The activity was measured using LDH cytotoxicity assay kit (Linear chemicals, Spain), in accordance with manufacturer’s instructions. The percent of LDH released from the cells was determined using the units/L of protein.
Intracellular protein leakage
The bacterial cultures were treated with 1 mg/ml of M. minuta leaf extract and incubated for 14 h at 37 °C. After incubation, the cells were centrifuged at 5000 rpm for 10 min and the supernatants were collected. To determine the intracellular protein leakage, the supernatant was assayed according to the method of Bradford M.M .
Scanning electron microscope observation (FE-SEM)
The morphological changes of bacterial cells treated with M. minuta extracts, were observed under scanning electron microscope (VEGA3 TESCAN) and the procedures were performed according to Kockro et al. . Bacterial cells (106 CFU/ml) were treated with 1000 µg/ml of extracts for 14 h, centrifuged at 3000g for 30 min. The pellets were washed three times with phosphate buffered saline and pre-fixed with 10% formaldehyde for 30 min. The pre-fixed cells were washed with 30, 50, 70, 80, 90 and 100% of ethanol.
In silico molecular docking studies
The major constituents of M. minuta leaves extract (hexane: methanol) were subjected to molecular docking studies with three target proteins (TEM-72, PDB ID: 3P98; SHV-2, PDB ID: 1N9B; and Topoisomerase IV, PDB ID: 3LPS). Search of protein data bank confirmed presence of 3D structures of ESBL TEM-72 (at 2.10°A resolution), SHV-2 (at 0.90° A resolution) and Topoisomerase IV (at 0.98°A resolution) proteins. To analyze the nature of interactions with bioactive compounds, docking was carried out using AUTODOCK 4.0 and other docking procedures were followed as reported in our earlier work .All figures with structural representation were produced using PyMol .
The results obtained from cultured cells were analysed by Student’s t test. Statistical analysis were carried out using statistical package for the social sciences software (SPSS version 21; SPSS Inc., Chicago, USA) and p < 0.05 were considered as significant.
In the present study, the results indicated that M. minuta leaves extract showed antioxidant, antibacterial effect against food pathogens by disrupting their outer membrane and in silico docking analysis showed the major compound (benzoic acid-4-ethoxy-ethyl ester and farnesol acetate) exhibited good affinity towards of topoisomerase IV, SHV-2 and TEM-72. These results suggest that M. minuta may act as promising natural additives to prevent food spoilage bacteria. Moreover, the present study is a preliminary experiment to screen bioactive metabolite profile of M. minuta leaves and here we have used the GC/MS analysis as a tool to report the chemical constituents. Therefore, further studies are needed to validate the novel antibacterial bioactive molecules.
SA, RB designed and performed the research. RB did the sample collection. PA and HS analyzed the data and interpreted the results. SA and HS wrote the paper. All authors read and approved the final manuscript.
The authors thank the Sejong University, Republic of Korea for their support and ANNA University, India for providing the SEM facility.
The authors declare that they have no competing interests.
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