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A theoretical investigation of microhydration of cationic amino acids

Hydration of biological macromolecules has a crucial role as it modifies their structures, stabilities, and functions [1]. Water molecules preferentially occupy sites either inside the macromolecules or on the surface, where hydrogen bonds with the amino acids (AA) of the protein are built up and stabilize its specific fold [2]. Investigating the interactions of AA with water is therefore an essential first step to understand the solvation process that opens insights into fields as human health, biomedicine, biotechnology, protein engineering or drug design.

In this work, we describe the microhydration of AA, and particularly of protonated glycine (GlyH+), alanine (AlaH+) and proline (ProH+). First a high-level theoretical method was setting up in order to compute the structures and properties of GlyH+water complexes, Gly being the simplest AA and a suitable model for such a study [3]. Then complexes with more than one water molecule [4] as well as other amino acids (Ala and Pro) [5] were investigated, to extend the validity domain of our computational procedure. Using a MP2/6-311++G(d,p) approach combined with a full counterpoise correction, we obtained theoretical hydration enthalpies that are in perfect agreement with the most recent experimental investigations. Gly/Ala/ProH+-(H2O)n complexes (n: 0–4) have been systematically classified in a family tree, based on their structures and energetics. A Darwinian-like logic can be used to build such protonated AA complexes, as the most stable complex at any stage gives the best structure at the next generation.

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    Michaux C, Wouters J, Perpète EA, Jacquemin D: J Phys Chem B. 2008, 112: 2430-2438. 10.1021/jp710034r.

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    Michaux C, Wouters J, Perpète EA, Jacquemin D: J Phys Chem B. 2008, Michaux C, Wouters J, Perpète E A, Jacquemin D, J Phys Chem B Letters, 2008, 112:7702–7705.,

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Correspondence to C Michaux.

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Open Access This article is distributed under the terms of the Creative Commons Attribution 2.0 International License (https://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Keywords

  • Proline
  • Macromolecule
  • Perfect Agreement
  • Protein Engineering
  • Biological Macromolecule