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Table 6 Molecular docking affinities of the synthesized compounds against E. coli DNA gyrase B (PDB ID: 6F86)

From: Synthesis, antibacterial and antioxidant activities of Thiazole-based Schiff base derivatives: a combined experimental and computational study

Compounds

Affinity (kcal/mol)

H-bond

Residual amino acid interactions

hydrophobic/Ï€-cation/Ï€-anion/Ï€-alkyl interactions

Van-der Walls interactions

7

− 6.2

–

Asn-46, Glu-50, Asp-73, Ile-78, Ala-47, Thr-165, Val-167

Val-43,

8

− 6.0

Asn-46

Asp-73, Glu-50, Ile-94, Ile-78, Ala-47, Thr-165

Val-43, Val-167

9

− 6.9

Glu-50, Ile-94

Arg-76, Asn-46, Ile-78

Gly-77, Gly-75, Thr-165, Val-97, Val-120, Ser-121

10

− 6.6

Asn-46, Glu-50

Asp-73, Thr-165, Ala-47, Ile-78

Val-43, Val-167, Ile-94

11

− 7.5

Val-120, Asn-46, Ser-121

Glu-50, Ile-78

Asp-73, Asp-49, Gly-77, Gly-75, Thr-165, Val-97, Leu-98, Gly-119

Amoxicillin

− 6.1

Asp-73, Arg-76, Gly-77, Thr-165

Glu-50, Ile-78

Gly-77, Gly-75