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Table 1 E-value (kcal/mol) and post-docking analysis of best pose of (2E,5E)-2-(4-methoxybenzylidene)-5-(4-nitrobenzylidene) cyclopentanone (AK-1a), (1E,4E)-4-(4-nitrobenzylidene)-1-(4-nitrophenyl) oct-1-en-3-one (AK-2a) and standard drugs with cyclooxygenase-1 (COX-1), cyclooxygenase-2 (COX-2), mu receptor, kappa receptor, delta receptor, human capcaisin receptor (HCR) and purinoceptor-3 (P2X3)

From: Synthesis, characterization, molecular docking, analgesic, antiplatelet and anticoagulant effects of dibenzylidene ketone derivatives

Target proteins

PDB-IDs

AK-1a

AK-2a

Standard drugs

E-value (kcal/mol)

No. of H-bond

Binding residues

E-value (kcal/mol)

No. of H-bond

Binding residues

Standard

E-value (kcal/mol)

No. of H-bond

Binding residues

COX 1

3N8X

− 10.2

03

GLN-A:44

CYS-A:47

ARG-A:469

− 9.6

02

TYR-A:130

ARG-A:469

Aspirin

− 6.1

04

SER-A:126(2)

GLN-A:372

GLU-B:543

COX 2

1PXX

− 9.7

03

TRP-A:323

GLN-A:327

SER-B:1049

− 9.6

05

GLN-C:2543

ARG-D:3044

TYR-D:3130(2)

ALA-D:3156

Aspirin

− 7.6

03

THR-B:1206

HIS-B:1207

TRP-B:1387

Mu receptor

5C1M

− 8.7

02

ASN-A:127

HIS-A:297

-8.8

03

TYR-A:75

ASN-A:127

HIS-A:297

Morphine

− 8.5

02

HIS-A:297

ASP-A:147

Kappa receptor

4DJH

− 8.3

02

THR-A:63

TYR-B:313

− 8.4

03

THR-B:63(2)

SER-B:116

Morphine

− 8.0

00

00

Delta receptor

4EJ4

− 8.2

03

VAL-A:75

LYS-A:166

ASN-A:169

− 8.0

02

LYS-A:108

HIS-A:278

Morphine

− 7.3

00

00

Human Capcaisin receptor

3J9J

− 8.8

02

ARG-C:177

GLY-C:183

− 8.9

01

ARG-D:177

Capsazepine

− 8.2

03

ASN-A:57

SER-A:103

TYR-A:107

P2X3

5SVL

− 7.4

01

TRP-A:41

− 6.9

02

LYS-A:65

PHE-A:205

Capsazepine

− 5.4

02

ASP-A:266

ASN-A:279

  1. GLN glutamine, CYS cysteine, ARG arginine, TYR tyrosine, SER serine, GLU glutamic acid, TRP tryptophan, ALA alanine, THR threonine, HIS histidine, ASN asparagine, VAL valine, LYS lysine, GLY glycine, PHE phenylalanine, ASP aspartic acid