Table 1 Overview of the different file formats stored in SQL *LIMS™
From: Assembling proteomics data as a prerequisite for the analysis of large scale experiments
Workflow Step | Structured Data | Unstructured Data |
|---|---|---|
Sample Preparation | - Combination of basic sample types | |
- > 100 sample attributes | ||
Protein Separation | Spot data | - PDQuest® gel image (.tif files) |
- PDQuest® spot reports (text ASCII files) | ||
- Topspot gel image (.jpg files) | ||
- Topspot spot report (text ASCII files) | ||
MS Analysis | MS peaklist data | - Thermo Finnigan LCQ™ DECA peaklist files (text ASCII files) |
- Thermo Finnigan LCQ™ raw data location reference | ||
- MALDI Voyager Elite raw peaklist files (text ASCII files) | ||
Protein Identification | Protein data Peptide data | - Matrix Science Mascot® PMF v 1.8 search result (.html files) |
- Matrix Science Mascot® MSMS Query v 1.8 search result (.html files) | ||
- Matrix Science Mascot® Sequence v 1.8 search result (.html file) | ||
- ProteinProspector MS-Fit® v 3.2.1, 3.4.1 search result (.html files) | ||
- ProteinProspector MS-Tag® v 3.2.1, 3.4.1 search result (.html files) | ||
- SEQUEST® v 2.0 search result (.xls files) |